Deep Learning for Classification of Colorectal Polyps on Whole-Slide Images
Title:
Deep Learning for Classification of Colorectal Polyps on Whole-Slide Images
Link:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545773/
Abstract:
Context: Histopathological characterization of colorectal polyps is critical for determining the risk of colorectal cancer and future rates of surveillance for patients. However, this characterization is a challenging task and suffers from significant inter- and intra-observer variability.
Aims: We built an automatic image analysis method that can accurately classify different types of colorectal polyps on whole-slide images to help pathologists with this characterization and diagnosis.
Setting and Design: Our method is based on deep-learning techniques, which rely on numerous levels of abstraction for data representation and have shown state-of-the-art results for various image analysis tasks.
Subjects and Methods: Our method covers five common types of polyps (i.e., hyperplastic, sessile serrated, traditional serrated, tubular, and tubulovillous/villous) that are included in the US Multisociety Task Force guidelines for colorectal cancer risk assessment and surveillance. We developed multiple deep-learning approaches by leveraging a dataset of 2074 crop images, which were annotated by multiple domain expert pathologists as reference standards.
Statistical Analysis: We evaluated our method on an independent test set of 239 whole-slide images and measured standard machine-learning evaluation metrics of accuracy, precision, recall, and F1 score and their 95% confidence intervals.
Results: Our evaluation shows that our method with residual network architecture achieves the best performance for classification of colorectal polyps on whole-slide images (overall accuracy: 93.0%, 95% confidence interval: 89.0%–95.9%).
Conclusions: Our method can reduce the cognitive burden on pathologists and improve their efficacy in histopathological characterization of colorectal polyps and in subsequent risk assessment and follow-up recommendations.
Citation:
Bruno Korbar, Andrea M. Olofson, Allen P. Miraflor, Catherine M. Nicka, Matthew A. Suriawinata, Lorenzo Torresani, Arief A. Suriawinata, Saeed Hassanpour, “Deep Learning for Classification of Colorectal Polyps on Whole-Slide Images”, Journal of Pathology Informatics, 8:30, 2017.
Winner of the Journal of Pathology Informatics Most Popular Article Award for 2017 at Pathology Informatics Summit.
